Selecting buried residues
نویسندگان
چکیده
منابع مشابه
Evidence for Buried Carboxyl Residues and Immobilization
Chemical modification and electron spin resonance techniques were used to study the topography of carboxyl residues in purple membranes. The results showed that buried carboxyl groups are )ocated in hydrophobic protein domains at least 16 A from the membrane surface, and that the carboxyl-terminal tail is partially immobilized. Carboxyl groups on bacteriorhodopsin in purple membranes...
متن کاملBuried polar residues in coiled-coil interfaces.
Coiled coils, estimated to constitute 3-5% of the encoded residues in most genomes, are characterized by a heptad repeat, (abcdefg)(n), where the buried a and d positions form the interface between multiple alpha-helices. Although generally hydrophobic, a substantial fraction ( approximately 20%) of these a- and d-position residues are polar or charged. We constructed variants of the well-chara...
متن کاملTolerance to the substitution of buried apolar residues by charged residues in the homologous protein structures.
Occurrence and accommodation of charged amino acid residues in proteins that are structurally equivalent to buried non-polar residues in homologues have been investigated. Using a dataset of 1,852 homologous pairs of crystal structures of proteins available at 2A or better resolution, 14,024 examples of apolar residues in the structurally conserved regions replaced by charged residues in homolo...
متن کاملUncovering pH-Dependent Transient States of Proteins with Buried Ionizable Residues
The role of pH in regulating biological activity is ubiquitous, and understanding pH-mediated activity has traditionally relied on analyzing static biomolecular structures of highly populated ground states solved near physiological pH. However, recent advances have shown the increasing importance of transiently populated states, the characterization of which is extremely challenging but made pl...
متن کاملExperimental pK(a) values of buried residues: analysis with continuum methods and role of water penetration.
Lys-66 and Glu-66, buried in the hydrophobic interior of staphylococcal nuclease by mutagenesis, titrate with pK(a) values of 5.7 and 8.8, respectively (Dwyer et al., Biophys. J. 79:1610-1620; García-Moreno E. et al., Biophys. Chem. 64:211-224). Continuum calculations with static structures reproduced the pK(a) values when the protein interior was treated with a dielectric constant (epsilon(in)...
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ژورنال
عنوان ژورنال: Nature
سال: 1989
ISSN: 0028-0836,1476-4687
DOI: 10.1038/339014a0